numpy>=1.26
torch>=2.7
transformers>=4.49
pandas>=2.3
biopython>=1.85
sequence-models>=1.8
scipy>=1.13
evodiff>=1.1

[full]
mdanalysis>=2.7
python-dotenv>=1.0
matplotlib>=3.10
seaborn>=0.13
h5py>=3.13
scikit-learn>=1.5
torch-geometric>=2.5
torch-scatter>=2.1
datasets>=3.2
blosum>=2.0
fair-esm>=2.0
evodiff>=1.1
pdb-tools>=2.5
wandb>=0.16
tqdm>=4.67
ijson>=3.3
pyfastx>=2.2
huggingface_hub>=0.27
azure-identity>=1.21
