LICENSE
README.md
setup.py
stemsage/__init__.py
stemsage/main.py
stemsage/pipeline.py
stemsage.egg-info/PKG-INFO
stemsage.egg-info/SOURCES.txt
stemsage.egg-info/dependency_links.txt
stemsage.egg-info/entry_points.txt
stemsage.egg-info/requires.txt
stemsage.egg-info/top_level.txt
stemsage/steps/__init__.py
stemsage/steps/step1.py
stemsage/steps/step2.py
stemsage/steps/step3.py
stemsage/steps/step4.py
stemsage/steps/step5.py
stemsage/templates/bedtofasta_preprocess_template.sh
stemsage/templates/generate_negative_set_template.py
stemsage/templates/rnafold_template.sh