MANIFEST.in
README.rst
setup.cfg
setup.py
bin/snp_analysis.py
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mgkit/__init__.py
mgkit/align.py
mgkit/consts.py
mgkit/graphs.py
mgkit/kegg.py
mgkit/logger.py
mgkit/simple_cache.py
mgkit/taxon.py
mgkit.egg-info/PKG-INFO
mgkit.egg-info/SOURCES.txt
mgkit.egg-info/dependency_links.txt
mgkit.egg-info/entry_points.txt
mgkit.egg-info/requires.txt
mgkit.egg-info/top_level.txt
mgkit/_private/__init__.py
mgkit/_private/align.py
mgkit/_private/counts.py
mgkit/_private/gffutils.py
mgkit/_private/plots.py
mgkit/_private/report/__init__.py
mgkit/_private/report/taxa_rank.py
mgkit/counts/__init__.py
mgkit/counts/func.py
mgkit/counts/scaling.py
mgkit/filter/__init__.py
mgkit/filter/common.py
mgkit/filter/gff.py
mgkit/filter/gff_old.py
mgkit/filter/lists.py
mgkit/filter/reads.py
mgkit/filter/taxon.py
mgkit/io/__init__.py
mgkit/io/blast.py
mgkit/io/fasta.py
mgkit/io/fastq.py
mgkit/io/gff.py
mgkit/io/gff_old.py
mgkit/io/glimmer.py
mgkit/io/snpdat.py
mgkit/io/uniprot.py
mgkit/mappings/__init__.py
mgkit/mappings/cazy.py
mgkit/mappings/eggnog.py
mgkit/mappings/enzyme.py
mgkit/mappings/go.py
mgkit/mappings/pandas_map.py
mgkit/mappings/taxon.py
mgkit/mappings/utils.py
mgkit/net/__init__.py
mgkit/net/embl.py
mgkit/net/uniprot.py
mgkit/net/utils.py
mgkit/plots/__init__.py
mgkit/plots/boxplot.py
mgkit/plots/colors.py
mgkit/plots/heatmap.py
mgkit/plots/unused.py
mgkit/plots/utils.py
mgkit/snps/__init__.py
mgkit/snps/classes.py
mgkit/snps/conv_func.py
mgkit/snps/filter.py
mgkit/snps/funcs.py
mgkit/snps/mapper.py
mgkit/utils/__init__.py
mgkit/utils/common.py
mgkit/utils/dictionary.py
mgkit/utils/pandas.py
mgkit/utils/r_func.py
mgkit/utils/sequence.py
mgkit/utils/trans_tables.py
mgkit/workflow/__init__.py
mgkit/workflow/add_coverage.py
mgkit/workflow/add_gff_info.py
mgkit/workflow/assembly.py
mgkit/workflow/blast2gff.py
mgkit/workflow/download_data.py
mgkit/workflow/download_profiles.py
mgkit/workflow/fastq_utils.py
mgkit/workflow/filter_gff.py
mgkit/workflow/filter_gff_old.py
mgkit/workflow/hmmer2gff.py
mgkit/workflow/nuc2aa.py
mgkit/workflow/snp_parser.py
mgkit/workflow/snp_parser_old.py
mgkit/workflow/snps_wf.py
mgkit/workflow/utils.py
tests/_utils.py
tests/misc_data.py
tests/taxon_data.py
tests/test_filter_gff.py
tests/test_filters_snps.py
tests/test_filters_taxon.py
tests/test_gff.py
tests/test_kegg.py
tests/test_mappings.py
tests/test_misc.py
tests/test_r_utils.py
tests/test_seq_utils.py
tests/test_snps.py
tests/test_taxon.py
tests/misc_data/test-seq-aa.fa
tests/misc_data/test-seq-nuc.fa
tests/misc_data/test.gff