LICENSE
MANIFEST.in
README.md
setup.py
TreeSAK/ALE.py
TreeSAK/ALE1.py
TreeSAK/ALE2.py
TreeSAK/ALE2RTC.py
TreeSAK/ALE3.py
TreeSAK/ALE4.py
TreeSAK/ALE5.py
TreeSAK/ALE6.py
TreeSAK/ALE_backup.py
TreeSAK/AlignmentPruner.py
TreeSAK/AssessCVG.py
TreeSAK/AssessMarker.py
TreeSAK/AssessMarkerDeltaLL.py
TreeSAK/AssessMarkerPA.py
TreeSAK/BMGE.jar
TreeSAK/BMGE.py
TreeSAK/CompareMCMC.py
TreeSAK/ConcateMSA.py
TreeSAK/ConvertMSA.py
TreeSAK/Dating.py
TreeSAK/Dir.rb
TreeSAK/ExtractMarkerSeq.py
TreeSAK/FastRoot.py
TreeSAK/FastRoot_backup.py
TreeSAK/GTDB_tree.py
TreeSAK/KEGG_Luo17.py
TreeSAK/LcaToLeaves.py
TreeSAK/MCMCtreeR.py
TreeSAK/MarkerRef2Tree.py
TreeSAK/MarkerRef2Tree_backup.py
TreeSAK/MarkerSeq2Tree.py
TreeSAK/ModifyTopo.py
TreeSAK/OMA.py
TreeSAK/OMA2.py
TreeSAK/OneLineAln.py
TreeSAK/PMSF.py
TreeSAK/PhyloBiAssoc.R
TreeSAK/PhyloBiAssoc.py
TreeSAK/PlotMcmcNode.py
TreeSAK/RootTree.py
TreeSAK/SequentialDating.py
TreeSAK/SingleAleHGT.py
TreeSAK/SingleLinePhy.py
TreeSAK/SliceMSA.py
TreeSAK/SplitScore.py
TreeSAK/SplitScore1.py
TreeSAK/SplitScore1OMA.py
TreeSAK/SplitScore2.py
TreeSAK/TaxaCountStats.R
TreeSAK/TreeSAK_config.py
TreeSAK/VERSION
TreeSAK/VisHPD95.R
TreeSAK/VisHPD95.py
TreeSAK/__init__.py
TreeSAK/ale_parser.py
TreeSAK/ale_splitter.py
TreeSAK/compare_trees.R
TreeSAK/compare_trees.py
TreeSAK/do_rrtc.rb
TreeSAK/fa2phy.py
TreeSAK/format_leaf_name.py
TreeSAK/get_arCOG_seq.py
TreeSAK/global_functions.py
TreeSAK/gtdb_root.py
TreeSAK/pRTC.py
TreeSAK/parse_deltall_stdout.py
TreeSAK/pb_mpi.py
TreeSAK/plot_distruibution_th.py
TreeSAK/prep_mcmctree_ctl.py
TreeSAK/print_leaves.py
TreeSAK/rename_leaves.py
TreeSAK/replace_clades.py
TreeSAK/root_with_out_group.py
TreeSAK/run_TaxaCountStats_R_s1.py
TreeSAK/subsample_drep_gnms.py
TreeSAK/subset_tree.py
TreeSAK/subset_tree_stupid_old_way.py
TreeSAK/test_1.py
TreeSAK/test_2.py
TreeSAK/tmp_1.py
TreeSAK/tmp_2.py
TreeSAK/tmp_3.py
TreeSAK/tmp_4.py
TreeSAK/weighted_rand.rb
TreeSAK.egg-info/PKG-INFO
TreeSAK.egg-info/SOURCES.txt
TreeSAK.egg-info/dependency_links.txt
TreeSAK.egg-info/requires.txt
TreeSAK.egg-info/top_level.txt
bin/TreeSAK