.dockerignore
.gitattributes
.gitignore
.readthedocs.yaml
MANIFEST.in
Manifest.in
QuickStartGuide.md
README.md
docker-compose.yml
pyproject.toml
requirements.txt
setup.py
DashML/__init__.py
DashML/Basecall/Basecall_Bias.py
DashML/Basecall/Basecall_Paths.py
DashML/Basecall/Basecall_Pipeline.py
DashML/Basecall/Basecall_Plot.py
DashML/Basecall/Basecalls.py
DashML/Basecall/__init__.py
DashML/Basecall/run_basecall.py
DashML/Database_fx/DB.py
DashML/Database_fx/DBConnect.py
DashML/Database_fx/Insert_DB.py
DashML/Database_fx/Select_DB.py
DashML/Database_fx/Select_Metrics_DB.py
DashML/Database_fx/__init__.py
DashML/GUI/DT.py
DashML/GUI/__init__.py
DashML/GUI/default1.png
DashML/GUI/default2.png
DashML/GUI/default3.png
DashML/GUI/default4.png
DashML/GUI/default5.png
DashML/GUI/default6.png
DashML/GUI/default7.png
DashML/GUI/default8.png
DashML/Landscape/__init__.py
DashML/Landscape/Cluster/Centroid_Analysis.py
DashML/Landscape/Cluster/Centroid_ConservedRegions.py
DashML/Landscape/Cluster/Centroid_Fold.py
DashML/Landscape/Cluster/Centroid_MFE.py
DashML/Landscape/Cluster/Centroid_Putative.py
DashML/Landscape/Cluster/Cluster_Num.py
DashML/Landscape/Cluster/Cluster_means.py
DashML/Landscape/Cluster/Cluster_mode.py
DashML/Landscape/Cluster/Cluster_native.py
DashML/Landscape/Cluster/Native_MFE.py
DashML/Landscape/Cluster/Structure_Landscape_Pipeline.py
DashML/Landscape/Cluster/__init__.py
DashML/Landscape/Cluster/run_landscape.py
DashML/Predict/Gmm_Analysis.py
DashML/Predict/Gmm_Analysis2.py
DashML/Predict/Load.py
DashML/Predict/Lof.py
DashML/Predict/Metric_Average.py
DashML/Predict/Metric_Reads.py
DashML/Predict/Peak_Analysis.py
DashML/Predict/Peak_Analysis_BC.py
DashML/Predict/Predict_BPP.py
DashML/Predict/Predict_Fold.py
DashML/Predict/Predicts.py
DashML/Predict/__init__.py
DashML/Predict/run_predict.py
DashML/UI/DT_CLI.py
DashML/UI/__init__.py
DashML/Varna/VARNAv3-93.jar
DashML/Varna/__init__.py
db/init.sql
db/my.cnf
docs/DashML.Basecall.rst
docs/DashML.Database_fx.rst
docs/DashML.GUI.rst
docs/DashML.Landscape.Cluster.rst
docs/DashML.Landscape.rst
docs/DashML.Predict.rst
docs/DashML.UI.rst
docs/DashML.rst
docs/Makefile
docs/conf.py
docs/index.rst
docs/installation.rst
docs/make.bat
docs/modules.rst
docs/requirements.txt
docs/usage.rst