CHANGELOG.rst
LICENSE
MANIFEST.in
README.rst
requirements-dev.txt
requirements.txt
setup.cfg
setup.py
Crimson.egg-info/PKG-INFO
Crimson.egg-info/SOURCES.txt
Crimson.egg-info/dependency_links.txt
Crimson.egg-info/entry_points.txt
Crimson.egg-info/not-zip-safe
Crimson.egg-info/requires.txt
Crimson.egg-info/top_level.txt
crimson/__init__.py
crimson/cli.py
crimson/fastqc.py
crimson/flagstat.py
crimson/fusioncatcher.py
crimson/picard.py
crimson/star.py
crimson/star_fusion.py
crimson/utils.py
crimson/vep.py
tests/__init__.py
tests/test_fastqc.py
tests/test_flagstat.py
tests/test_fusioncatcher.py
tests/test_picard.py
tests/test_star.py
tests/test_star_fusion.py
tests/test_vep.py
tests/utils.py
tests/cases/README.rst
tests/cases/fastqc_nope.txt
tests/cases/fastqc_not_fastqc.zip
tests/cases/fastqc_v0101_01.txt
tests/cases/fastqc_v0101_02.fq_fastqc.zip
tests/cases/fastqc_v0101_02.txt
tests/cases/fusioncatcher_nope.txt
tests/cases/fusioncatcher_v0995a.txt
tests/cases/picard_alignment_summary_v1124_01.txt
tests/cases/picard_insert_size_v1124_01.txt
tests/cases/picard_library_complexity_v1124_01.txt
tests/cases/picard_mark_duplicates_v1124_01.txt
tests/cases/picard_nope.txt
tests/cases/picard_rna_seq_v1124_01.txt
tests/cases/picard_wgs_v1124_01.txt
tests/cases/samtools_flagstat_nope.txt
tests/cases/samtools_flagstat_v0119_01.txt
tests/cases/samtools_flagstat_v11_01.txt
tests/cases/star_fusion_nope.txt
tests/cases/star_fusion_v060_01.txt
tests/cases/star_fusion_v060_02.txt
tests/cases/star_nope.txt
tests/cases/star_v230_01.txt
tests/cases/vep_nope.txt
tests/cases/vep_v77_01.txt
tests/cases/fastqc_v0101_01_dir.fastqc/input.fq_fastqc/fastqc_data.txt