# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class
*.old
*.csv
# C extensions
*.so
.DS_Store
# # Distribution / packaging
# .Python
# build/
# 
# dist/
# downloads/
#
# lib/
# lib64/
# parts/
# sdist/
# var/
# wheels/
# share/python-wheels/
/build/
.RData
.vscode/
.Rhistory
all-files.txt
0
# Jupyter Notebook
.ipynb_checkpoints
*.old
/data


# pyenv
#   For a library or package, you might want to ignore these files since the code is
#   intended to run in multiple environments; otherwise, check them in:
# .python-version

# pipenv
#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
#   However, in case of collaboration, if having platform-specific dependencies or dependencies
#   having no cross-platform support, pipenv may install dependencies that don't work, or not
#   install all needed dependencies.
#Pipfile.lock

# poetry
#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
#   This is especially recommended for binary packages to ensure reproducibility, and is more
#   commonly ignored for libraries.
#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
#poetry.lock

# PEP 582; used by e.g. github.com/David-OConnor/pyflow
__pypackages__/

# Celery stuff
celerybeat-schedule
celerybeat.pid

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# R stuff
.Rhistory

# Spyder project settings
.spyderproject
.spyproject

_version.py
.python-version
uv.lock

/site
/historical_notebooks
/historical_notebooks/*

/open_work/test/*
/not_pushed/
/hopi/
hopi
/built_documentation/
.eggs/
*.egg-info/
/build/
/dist/
*~
*.zip
*.ipynb_checkpoints
not_pushed
conda-pkg/meta.yaml
tests/dicom_example_folder/*
tests/dicom_example_folder
config.json
/etc/cvasl/*
.helpers/fake_test_data/*
internal_results/*
open_work/internal_results
open_work/internal_results/*
harmonization_paper/Testing/*
# overlook all potentially patient related results
*.csv
!/tests/data/*.csv
!researcher_interface/sample_sep_values/showable_standard.csv
*.tsv
*.png
*.npy
!etcetera/python-logo.png
!etcetera/anaconda-logo.png
help/
researcher_interface/retool.ipynb
harmonization_paper/Testing/ComBat/ResultTestingSite/*
extended_harm_paper/our_datasets/*
extended_harm_paper/harmonizations/harm_results/*
loged1/*
lab_datasets/*
extended_harm_paper/our_datasets_legacy/*
.order.txt
