Metadata-Version: 2.1
Name: resolwe-bio
Version: 16.0.0a1
Summary: Bioinformatics pipelines for the Resolwe platform
Home-page: https://github.com/genialis/resolwe-bio
Author: Genialis, Inc.
Author-email: dev-team@genialis.com
License: Apache License (2.0)
Description: ======================
        Resolwe Bioinformatics
        ======================
        
        |build| |coverage| |docs| |pypi_version| |pypi_pyversions|
        
        .. |build| image:: https://ci.genialis.com/buildStatus/icon?job=genialis-github/resolwe-bio/master
            :target: https://ci.genialis.com/job/genialis-github/job/resolwe-bio/job/master/
            :alt: Build Status
        
        .. |coverage| image:: https://img.shields.io/codecov/c/github/genialis/resolwe-bio/master.svg
            :target: http://codecov.io/github/genialis/resolwe-bio?branch=master
            :alt: Coverage Status
        
        .. |docs| image:: https://readthedocs.org/projects/resolwe-bio/badge/?version=latest
            :target: http://resolwe-bio.readthedocs.io/
            :alt: Documentation Status
        
        .. |pypi_version| image:: https://img.shields.io/pypi/v/resolwe-bio.svg
            :target: https://pypi.python.org/pypi/resolwe-bio
            :alt: Version on PyPI
        
        .. |pypi_pyversions| image:: https://img.shields.io/pypi/pyversions/resolwe-bio.svg
            :target: https://pypi.python.org/pypi/resolwe-bio
            :alt: Supported Python versions
        
        .. |pypi_downloads| image:: https://img.shields.io/pypi/dm/resolwe-bio.svg
            :target: https://pypi.python.org/pypi/resolwe-bio
            :alt: Number of downloads from PyPI
        
        Bioinformatics pipelines for the Resolwe_ dataflow package for `Django
        framework`_.
        
        .. _Resolwe: https://github.com/genialis/resolwe
        .. _Django framework: https://www.djangoproject.com/
        
        
        Docs & Help
        ===========
        
        Read about getting started and how to write `processes` in the documentation_.
        
        To chat with developers or ask for help, join us on Slack_.
        
        .. _documentation: http://resolwe-bio.readthedocs.io/
        .. _Slack: http://resolwe.slack.com/
        
        
        Install
        =======
        
        Prerequisites
        -------------
        
        Make sure you have Python_ 3.6 installed on your system. If you don't have it
        yet, follow `these instructions
        <https://docs.python.org/3/using/index.html>`__.
        
        Resolwe requires PostgreSQL_ (9.4+). Many Linux distributions already include
        the required version of PostgreSQL (e.g. Fedora 22+, Debian 8+, Ubuntu 15.04+)
        and you can simply install it via distribution's package manager.
        Otherwise, follow `these instructions
        <https://wiki.postgresql.org/wiki/Detailed_installation_guides>`__.
        
        Additionally, installing some (indirect) dependencies from PyPI_ will require
        having a C compiler (e.g. GCC_) as well as Python development files installed
        on the system.
        
        Note
        ^^^^
        
        The preferred way to install the C compiler and Python development files is to
        use your distribution's packages, if they exist. For example, on a
        Fedora/RHEL-based system, that would mean installing ``gcc`` and
        ``python3-devel`` packages.
        
        .. _Python: https://www.python.org/
        .. _PostgreSQL: http://www.postgresql.org/
        .. _PyPi: https://pypi.python.org/
        .. _GCC: https://gcc.gnu.org/
        
        Using PyPI_
        -----------
        
        .. code::
        
            pip install resolwe-bio
        
        To install a pre-release, use:
        
        .. code::
        
            pip install --pre resolwe-bio
        
        Using source on GitHub_
        -----------------------
        
        .. code::
        
           pip install --pre https://github.com/genialis/resolwe-bio/archive/<git-tree-ish>.tar.gz
        
        where ``<git-tree-ish>`` can represent any commit SHA, branch name, tag name,
        etc. in `Resolwe Bioinformatics' GitHub repository`_. For example, to install
        the latest Resolwe Bioinformatics from the ``master`` branch, use:
        
        .. code::
        
           pip install --pre https://github.com/genialis/resolwe-bio/archive/master.tar.gz
        
        .. _`Resolwe Bioinformatics' GitHub repository`: https://github.com/genialis/resolwe-bio/
        .. _GitHub: `Resolwe Bioinformatics' GitHub repository`_
        
        
        Contribute
        ==========
        
        We welcome new contributors. To learn more, read Contributing_ section of the
        documentation.
        
        .. _Contributing: http://resolwe-bio.readthedocs.io/en/latest/contributing.html
        
Keywords: bioinformatics resolwe bio pipelines dataflow django
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Environment :: Web Environment
Classifier: Framework :: Django
Classifier: Intended Audience :: Developers
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Requires-Python: >=3.6, <3.7
Provides-Extra: package
Provides-Extra: test
Provides-Extra: docs
