LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
setup.py
mapdamage/__init__.py
mapdamage/__main__.py
mapdamage/align.py
mapdamage/composition.py
mapdamage/main.py
mapdamage/mp_test.py
mapdamage/parseoptions.py
mapdamage/rescale.py
mapdamage/rscript.py
mapdamage/seq.py
mapdamage/tables.py
mapdamage/version.py
mapdamage.egg-info/PKG-INFO
mapdamage.egg-info/SOURCES.txt
mapdamage.egg-info/dependency_links.txt
mapdamage.egg-info/entry_points.txt
mapdamage.egg-info/requires.txt
mapdamage.egg-info/top_level.txt
mapdamage/Rscripts/lengths.R
mapdamage/Rscripts/mapDamage.R
mapdamage/Rscripts/stats/checkLibraries.R
mapdamage/Rscripts/stats/data.R
mapdamage/Rscripts/stats/function.R
mapdamage/Rscripts/stats/main.R
mapdamage/Rscripts/stats/postConditonal.R
mapdamage/Rscripts/stats/priorPropose.R
mapdamage/Rscripts/stats/runGeneral.R
mapdamage/Rscripts/stats/start.R
mapdamage/seqtk/README.md
mapdamage/seqtk/kseq.h
mapdamage/seqtk/seqtk.c
mapdamage/tests/dnacomp.txt
mapdamage/tests/fake1.fasta
mapdamage/tests/fake1.fasta.fai
mapdamage/tests/test.bam
mapdamage/tests/test.rescaled.correct.sam
mapdamage/tests/probs/Stats_out_MCMC_correct_prob.csv