LICENSE
LICENSE_before_v3.4.39
README.md
pyproject.toml
src/gwaslab/__init__.py
src/gwaslab/cache_manager.py
src/gwaslab/g_Log.py
src/gwaslab/g_Phenotypes.py
src/gwaslab/g_Sumstats.py
src/gwaslab/g_SumstatsMulti.py
src/gwaslab/g_SumstatsPair.py
src/gwaslab/g_SumstatsSet.py
src/gwaslab/g_SumstatsT.py
src/gwaslab/g_Sumstats_polars.py
src/gwaslab/g_Sumstats_summary.py
src/gwaslab/g_headers.py
src/gwaslab/g_meta.py
src/gwaslab/g_meta_update.py
src/gwaslab/g_vchange_status.py
src/gwaslab/g_vchange_status_polars.py
src/gwaslab/g_version.py
src/gwaslab/run_script.py
src/gwaslab.egg-info/PKG-INFO
src/gwaslab.egg-info/SOURCES.txt
src/gwaslab.egg-info/dependency_links.txt
src/gwaslab.egg-info/requires.txt
src/gwaslab.egg-info/top_level.txt
src/gwaslab/bd/bd_common_data.py
src/gwaslab/bd/bd_config.py
src/gwaslab/bd/bd_download.py
src/gwaslab/bd/bd_get_hapmap3.py
src/gwaslab/bd/bd_path_manager.py
src/gwaslab/data/formatbook.json
src/gwaslab/data/reference.json
src/gwaslab/data/chrx_par/chrx_par_hg19.bed.gz
src/gwaslab/data/chrx_par/chrx_par_hg38.bed.gz
src/gwaslab/data/hapmap3_SNPs/hapmap3_db150_hg19.snplist.gz
src/gwaslab/data/hapmap3_SNPs/hapmap3_db151_hg38.snplist.gz
src/gwaslab/data/high_ld/high_ld_hla_hg19.bed.gz
src/gwaslab/data/high_ld/high_ld_hla_hg38.bed.gz
src/gwaslab/extension/ldsc/ldsc_irwls.py
src/gwaslab/extension/ldsc/ldsc_jackknife.py
src/gwaslab/extension/ldsc/ldsc_ldscore.py
src/gwaslab/extension/ldsc/ldsc_parse.py
src/gwaslab/extension/ldsc/ldsc_regressions.py
src/gwaslab/extension/ldsc/ldsc_sumstats.py
src/gwaslab/extension/prscs/prscs_gigrnd.py
src/gwaslab/extension/prscs/prscs_mcmc_gtb.py
src/gwaslab/extension/prscs/prscs_parse_genet.py
src/gwaslab/hm/hm_casting.py
src/gwaslab/hm/hm_casting_polars.py
src/gwaslab/hm/hm_harmonize_sumstats.py
src/gwaslab/hm/hm_rsid_to_chrpos.py
src/gwaslab/io/io_load_ld.py
src/gwaslab/io/io_preformat_input.py
src/gwaslab/io/io_preformat_input_polars.py
src/gwaslab/io/io_process_args.py
src/gwaslab/io/io_read_ldsc.py
src/gwaslab/io/io_read_pipcs.py
src/gwaslab/io/io_read_tabular.py
src/gwaslab/io/io_to_formats.py
src/gwaslab/io/io_to_pickle.py
src/gwaslab/qc/qc_build.py
src/gwaslab/qc/qc_check_datatype.py
src/gwaslab/qc/qc_check_datatype_polars.py
src/gwaslab/qc/qc_fix_sumstats.py
src/gwaslab/qc/qc_fix_sumstats_polars.py
src/gwaslab/util/util_abf_finemapping.py
src/gwaslab/util/util_ex_calculate_ldmatrix.py
src/gwaslab/util/util_ex_calculate_prs.py
src/gwaslab/util/util_ex_gwascatalog.py
src/gwaslab/util/util_ex_infer_ancestry.py
src/gwaslab/util/util_ex_ldproxyfinder.py
src/gwaslab/util/util_ex_ldsc.py
src/gwaslab/util/util_ex_match_ldmatrix.py
src/gwaslab/util/util_ex_phewwas.py
src/gwaslab/util/util_ex_plink_filter.py
src/gwaslab/util/util_ex_process_h5.py
src/gwaslab/util/util_ex_process_ref.py
src/gwaslab/util/util_ex_run_2samplemr.py
src/gwaslab/util/util_ex_run_ccgwas.py
src/gwaslab/util/util_ex_run_clumping.py
src/gwaslab/util/util_ex_run_coloc.py
src/gwaslab/util/util_ex_run_hyprcoloc.py
src/gwaslab/util/util_ex_run_magma.py
src/gwaslab/util/util_ex_run_mesusie.py
src/gwaslab/util/util_ex_run_mtag.py
src/gwaslab/util/util_ex_run_prscs.py
src/gwaslab/util/util_ex_run_scdrs.py
src/gwaslab/util/util_ex_run_susie.py
src/gwaslab/util/util_in_calculate_gc.py
src/gwaslab/util/util_in_calculate_power.py
src/gwaslab/util/util_in_convert_h2.py
src/gwaslab/util/util_in_correct_winnerscurse.py
src/gwaslab/util/util_in_estimate_ess.py
src/gwaslab/util/util_in_fill_data.py
src/gwaslab/util/util_in_filter_value.py
src/gwaslab/util/util_in_get_density.py
src/gwaslab/util/util_in_get_sig.py
src/gwaslab/util/util_in_merge.py
src/gwaslab/util/util_in_meta.py
src/gwaslab/util/util_in_meta_polars.py
src/gwaslab/util/util_in_snphwe.py
src/gwaslab/viz/viz_aux_annotate_plot.py
src/gwaslab/viz/viz_aux_chromatin.py
src/gwaslab/viz/viz_aux_property.py
src/gwaslab/viz/viz_aux_quickfix.py
src/gwaslab/viz/viz_aux_reposition_text.py
src/gwaslab/viz/viz_aux_save_figure.py
src/gwaslab/viz/viz_plot_associations.py
src/gwaslab/viz/viz_plot_compare_af.py
src/gwaslab/viz/viz_plot_compare_effect.py
src/gwaslab/viz/viz_plot_credible_sets.py
src/gwaslab/viz/viz_plot_effect.py
src/gwaslab/viz/viz_plot_forestplot.py
src/gwaslab/viz/viz_plot_miamiplot.py
src/gwaslab/viz/viz_plot_miamiplot2.py
src/gwaslab/viz/viz_plot_mqqplot.py
src/gwaslab/viz/viz_plot_phe_heatmap.py
src/gwaslab/viz/viz_plot_qqplot.py
src/gwaslab/viz/viz_plot_regional2.py
src/gwaslab/viz/viz_plot_regionalplot.py
src/gwaslab/viz/viz_plot_rg_heatmap.py
src/gwaslab/viz/viz_plot_scatter_with_reg.py
src/gwaslab/viz/viz_plot_stackedregional.py
src/gwaslab/viz/viz_plot_template.py
src/gwaslab/viz/viz_plot_trumpetplot.py