LICENSE.md
README.md
pyproject.toml
biapy/__init__.py
biapy/_biapy.py
biapy.egg-info/PKG-INFO
biapy.egg-info/SOURCES.txt
biapy.egg-info/dependency_links.txt
biapy.egg-info/entry_points.txt
biapy.egg-info/requires.txt
biapy.egg-info/top_level.txt
biapy/config/__init__.py
biapy/config/config.py
biapy/data/__init__.py
biapy/data/data_2D_manipulation.py
biapy/data/data_3D_manipulation.py
biapy/data/data_manipulation.py
biapy/data/dataset.py
biapy/data/norm.py
biapy/data/pre_processing.py
biapy/data/generators/__init__.py
biapy/data/generators/augmentors.py
biapy/data/generators/chunked_test_pair_data_generator.py
biapy/data/generators/pair_base_data_generator.py
biapy/data/generators/pair_data_2D_generator.py
biapy/data/generators/pair_data_3D_generator.py
biapy/data/generators/single_base_data_generator.py
biapy/data/generators/single_data_2D_generator.py
biapy/data/generators/single_data_3D_generator.py
biapy/data/generators/test_pair_data_generators.py
biapy/data/generators/test_single_data_generator.py
biapy/data/post_processing/__init__.py
biapy/data/post_processing/post_processing.py
biapy/data/post_processing/smooth_tiled_predictions.py
biapy/engine/__init__.py
biapy/engine/base_workflow.py
biapy/engine/check_configuration.py
biapy/engine/classification.py
biapy/engine/denoising.py
biapy/engine/detection.py
biapy/engine/image_to_image.py
biapy/engine/instance_seg.py
biapy/engine/metrics.py
biapy/engine/self_supervised.py
biapy/engine/semantic_seg.py
biapy/engine/super_resolution.py
biapy/engine/train_engine.py
biapy/engine/schedulers/warmup_cosine_decay.py
biapy/models/__init__.py
biapy/models/attention_unet.py
biapy/models/blocks.py
biapy/models/bmz_utils.py
biapy/models/dfcan.py
biapy/models/edsr.py
biapy/models/efficientnet.py
biapy/models/hrnet.py
biapy/models/mae.py
biapy/models/memory_bank.py
biapy/models/multiresunet.py
biapy/models/rcan.py
biapy/models/resunet++.py
biapy/models/resunet.py
biapy/models/resunet_se.py
biapy/models/seunet.py
biapy/models/simple_cnn.py
biapy/models/tr_layers.py
biapy/models/unet.py
biapy/models/unetr.py
biapy/models/unext_v1.py
biapy/models/unext_v2.py
biapy/models/vit.py
biapy/models/wdsr.py
biapy/utils/callbacks.py
biapy/utils/matching.py
biapy/utils/misc.py
biapy/utils/util.py
biapy/utils/scripts/calculate_detection_metrics.py
biapy/utils/scripts/calculate_metrics_3D.py
biapy/utils/scripts/calculate_similatiry_metrics.py
biapy/utils/scripts/change_dataset_id_bmz_models.py
biapy/utils/scripts/cityscape_remap_labels.py
biapy/utils/scripts/convert_instance_data_to_detection.py
biapy/utils/scripts/create_probability_csv.py
biapy/utils/scripts/crop_2D_dataset.py
biapy/utils/scripts/crop_3D_dataset.py
biapy/utils/scripts/crop_and_discard_3D_dataset.py
biapy/utils/scripts/detection_plots.py
biapy/utils/scripts/detection_probs_to_points.py
biapy/utils/scripts/estimate_blur.py
biapy/utils/scripts/export_bmz_test.py
biapy/utils/scripts/fill_holes_in_seg_masks.py
biapy/utils/scripts/filter_close_points.py
biapy/utils/scripts/from_class_csv_to_folders.py
biapy/utils/scripts/h5_to_tif.py
biapy/utils/scripts/h5_to_zarr.py
biapy/utils/scripts/lightmycell_data_preparation.py
biapy/utils/scripts/merge_dataset_channels.py
biapy/utils/scripts/order_axes.py
biapy/utils/scripts/repair_colab_notebooks.py
biapy/utils/scripts/run_checks.py
biapy/utils/scripts/tif_to_h5.py
biapy/utils/scripts/tif_to_zarr.py
biapy/utils/scripts/umap_calculation.py
biapy/utils/scripts/zarr_to_tif.py