SBML format

The Systems Biology Markup Language (SBML) is a representation format, based on XML, for communicating and storing computational models of biological processes. It is a free and open standard which can represent many different classes of biological phenomena, including metabolic networks, cell-signaling pathways, regulatory networks, infectious diseases, and many others.

BioUML allows to represent SBML models using the Systems Biology Graphical Notation (SBGN).

SBML structure

A model definition in SBML Levels 3 Version 1 consists of lists of the following components.

Supported formats

References

  1. http://sbml.org/
  2. http://en.wikipedia.org/wiki/SBML